rs32665030 SNP Detail

Summary

• ID
  rs32665030
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTGTGG GTGGATTGAT
  GTCCTTCTTC TTCCACTGGA TGTCCTGTCT GGCTATAGGA GGTGGCTACT TCAGTCTTTA
  TATCTCCAGT TGCTAGGATT CTTAGCTGGC ATTACTCCTA TAGACTCTCA GGAGGCTTCC
  CACTTTTAAA GTGAACATTA TTTTTTAATT AATAGCTATG TGATGTGGTG GTGGTGGGTG
  M
  ATTTGTAGGC TAGGCCAGAC ATGGTGATGC ATACCTTTAA TTCTAACACT CTGCATGTAG
  AGGCAGAGAA ATCTTGTGAA TTCTGAATCA GCCTGATGTC AATAGTGAGT TCCAGATCAG
  CTATTGCTAC CTGGAGAGAT CCTGTCTCAA AAAAAGAAAA AAAACAACAA AAAAAAAAAC
  CATCAACTTT TTACAGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47696266	NES11312257	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	C	A	C	C	A	A	C	A
ss136423364	ENSMUSSNP4963148	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32665030					SNP	C	A	A	A	A	C	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47696266	NES11312257	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039993 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1969 bp distal
Rr678057	regulatory region 678057	1011 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1458 bp downstream