rs32665090 SNP Detail

Summary

• ID
  rs32665090
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155924154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG GCCAGTCAAG ATGGGGGAGG
  S
  CAAGCAGTTG AGCAGCGCAG TGGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45678194	mCV24238749	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss148117610	ENSMUSSNP6968912	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321443272	CHEV_4_155213806	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32665090					SNP	G	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155924154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1115 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	within coordinates
Rr398927	regulatory region 398927	1487 bp upstream
Tssr40724	transcription start site region 40724	13 bp downstream
Tssr40725	transcription start site region 40725	within coordinates
Tssr40726	transcription start site region 40726	27 bp upstream
Tssr40727	transcription start site region 40727	72 bp upstream
Tssr40728	transcription start site region 40728	130 bp upstream
Tssr40729	transcription start site region 40729	1404 bp upstream
Tssr40730	transcription start site region 40730	1424 bp upstream
Tssr40731	transcription start site region 40731	1449 bp upstream
Tssr40732	transcription start site region 40732	1471 bp upstream
Tssr40733	transcription start site region 40733	1715 bp upstream
Tssr44980	transcription start site region 44980	1331 bp downstream
Tssr44981	transcription start site region 44981	1397 bp downstream