rs32666999 SNP Detail

Summary

• ID
  rs32666999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150322421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GGGTGGCTAC TAGCCGGCCG
  Y
  GAACTGACTT AAGATGCATT TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46712622	NES10999565	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	T		T	C	C
ss148050693	ENSMUSSNP20251	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss321428738	CHEV_4_149612073	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32666999					SNP	T	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712622	NES10999565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150322421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	164 bp distal
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	359 bp downstream
Rr605239	regulatory region 605239	1002 bp distal
Tssr40390	transcription start site region 40390	1197 bp downstream
Tssr40391	transcription start site region 40391	1184 bp downstream
Tssr40392	transcription start site region 40392	1168 bp downstream
Tssr40393	transcription start site region 40393	1155 bp downstream
Tssr40394	transcription start site region 40394	1145 bp downstream
Tssr40395	transcription start site region 40395	756 bp downstream
Tssr40396	transcription start site region 40396	725 bp downstream
Tssr40397	transcription start site region 40397	622 bp downstream
Tssr40398	transcription start site region 40398	259 bp downstream
Tssr40399	transcription start site region 40399	227 bp downstream