rs32667526 SNP Detail

Summary

• ID
  rs32667526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123827530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAACTG GCGCTCAAGC
  TAGAGCAGGA ACAACCGCCT TAGCCTCATC TTTGCATAAC TGTTCCCTTC TGTGTCCACC
  CTGTGCAACA GAGAACAATT CAGATCACAA CCTCCCTTCC CTCCCCTAAT TTGATTCTAA
  GCAGTGTTGC AGTTTCAGAG CTCTAACGCC CACCAATGTC ACGCAGCACT GCAGCTTGAG
  Y
  TGGAACTCAG GTGCCGGTGC AGCGTGTCCA TCCTGAACGA AAAGCTGGTG GTGGACATGG
  ATGTCATCTT TGAGAGTAGA AAGAGACAGA TACTTGGGAA TGTCAAAAGA GGTCTGAGAA
  AACACTGTTT CAAAGAAGTG CACCTTGAAT CTGGGCATTC CTTCCACAGA CATTTTCTCT
  GGGCTGGGAA GATGGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46175821	mCV23468037	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss50631667	NES14029331	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss145824465	ENSMUSSNP2015200	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32667526					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631667	NES14029331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123827530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	1343 bp proximal
Rpl13	ribosomal protein L13	1559 bp upstream
Rr382749	regulatory region 382749	within coordinates
Rr672353	regulatory region 672353	95 bp distal
Rr672354	regulatory region 672354	650 bp proximal
Rr672355	regulatory region 672355	1069 bp proximal
Tssr79911	transcription start site region 79911	1553 bp upstream
Tssr79912	transcription start site region 79912	1568 bp upstream
Tssr79913	transcription start site region 79913	1640 bp upstream
Tssr83335	transcription start site region 83335	1469 bp downstream