rs32668578 SNP Detail

Summary

• ID
  rs32668578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6418103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGTACT GGCTTGAGAA
  TTTAGGAGTG TTGGGGATTC AGGCTTTGGA GAGGAAAACA GCTATCTAGA CAAAGCAATG
  CTAGAGGAAC ACAGCTCAGA AGGCGAGATT AGCAAGAGCC CTTGAGAAAG CACCAGAGAG
  GTGTGGTGGT CTCTTCCAGC ACTCGCATCA GACACAGACC ACTTCTTCCC TAGTTCGTAG
  Y
  CACTGTCTCC TAAAACTCGC TGGGTTCTTC CCAAGCCTTG TTTAAAAACC TAATCACAAA
  CCCCTTCTTC CTCTACTGCA AACTCAAGCC CTTTTGTCCA ACCGCGAGTC TAGAAACTTT
  TTCCCTGTAG GCTGCTATGC TCCGTCTTTG CCCTGAGTTC TGGAGAAGGA ACCCAGGACC
  TTGGGCATGC TTGACAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49383744	NES12560551	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32668578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49383744	NES12560551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6418103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6920	CpG island 6920	1666 bp distal
Dab2	disabled 2, mitogen-responsive phosphoprotein	within coordinates
Rr498795	regulatory region 498795	1833 bp distal
Rr498796	regulatory region 498796	1994 bp distal
Rr498797	regulatory region 498797	962 bp distal
Rr498798	regulatory region 498798	1964 bp proximal
Tssr130460	transcription start site region 130460	1941 bp downstream
Tssr130461	transcription start site region 130461	1837 bp downstream
Tssr130462	transcription start site region 130462	1748 bp downstream
Tssr130463	transcription start site region 130463	1551 bp downstream