rs32668580 SNP Detail

Summary

• ID
  rs32668580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:6417653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACATGGA AAGCTTTAAA
  AATTATGGAG GGGCAACTTC ATGAATAGTA AATGTTGCTG TTGCTCTATA AAGATGAAAA
  AATTTCTGGC CCTAATCAGG CAAAGCAGGA GGGGAAGGGT GGAGGTAGAT ATAACTCCAA
  CCTAAGTAAT GGCAGAAAAT TTGCCAAAAT CCCTTGGAGA TAGCTGATAA GGCTCCAGGA
  R
  CGCTTCTGAT GGGATGTCTA ACCTACCTAG TTTACAATCT TGAGGCCTGG GTTCTGCACA
  TAGTAGCAGT GACTGGTTGT TTAGAAAGGA GGGACTAGCC AGGACTCGGG AGCCACTGCT
  ACCAAATGGC TTTTCATGGT GCTATCTTGT CCTGGATTAG GCTGCCCTGT TTTAGCTAGC
  TACCCCACCC ACCAAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49383746	NES12560548	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32668580					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49383746	NES12560548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:6417653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6920	CpG island 6920	1216 bp distal
Dab2	disabled 2, mitogen-responsive phosphoprotein	within coordinates
Rr498795	regulatory region 498795	1383 bp distal
Rr498796	regulatory region 498796	1544 bp distal
Rr498797	regulatory region 498797	512 bp distal
Tssr130460	transcription start site region 130460	1491 bp downstream
Tssr130461	transcription start site region 130461	1387 bp downstream
Tssr130462	transcription start site region 130462	1298 bp downstream
Tssr130463	transcription start site region 130463	1101 bp downstream