rs32668838 SNP Detail

Summary

• ID
  rs32668838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80914682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAACCGA TCAGCTCATG
  GGATAGGGAT TAGGACTCAG GGGAAGAAGA GCTGGGGTTA GAATCAAAGG GCCTGACTCT
  GGTCCCAGGT TGACTGCCCC CTGCCTGCCC CAATCTTGGC TAAAAGTTGC TTCACTTTTG
  CAGGACTTAG TATCCTCATC ATTAGAGGGA AGAGATGATA ACTATCTCAC AGAATCCTAA
  R
  AGATGATGAT GACTTTAAAA CTAGATTGTC ATACCTAGAG GGAAAATGTG GGATAAAGGC
  AAGTGACGCC TAGCAGACAA AAGAAGATGC ACAGGACTTT GGAAGCCTCC CAGGAAAGCT
  CTCTGAGATC TTCACAGAAG CCAAACTCAT CCAGGGAGTC TTTCCTGGAA TTGATGTTGT
  AAACAGCCTA AAACTTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47197074	NES11214107	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32668838					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47197074	NES11214107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80914682 () rs orientation: forward

Symbol	Name	Function Class
5830400J07Rik	RIKEN cDNA 5830400J07 gene	1624 bp downstream
Rr261581	regulatory region 261581	82 bp distal
Rr261582	regulatory region 261582	319 bp proximal
Susd6	sushi domain containing 6	within coordinates