rs32668974 SNP Detail

Summary

• ID
  rs32668974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150323440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT TTCTTACTGG TTATCAAATC
  Y
  GTGTCAGCTG AATATTCTGC TCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45694359	mCV24222741	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss46712643	NES10999455	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	T		T	C	C	C		C
ss148050744	ENSMUSSNP4987600	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321428747	CHEV_4_149613092	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32668974					SNP	T	T	C	C	C	C	C	T	T	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712643	NES10999455	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150323440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	1183 bp distal
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	1378 bp downstream
Rr398880	regulatory region 398880	1263 bp upstream
Rr605240	regulatory region 605240	1247 bp proximal
Rr605241	regulatory region 605241	1285 bp proximal
Rr605242	regulatory region 605242	1338 bp proximal
Tssr40395	transcription start site region 40395	1775 bp downstream
Tssr40396	transcription start site region 40396	1744 bp downstream
Tssr40397	transcription start site region 40397	1641 bp downstream
Tssr40398	transcription start site region 40398	1278 bp downstream
Tssr40399	transcription start site region 40399	1246 bp downstream
Tssr40400	transcription start site region 40400	1937 bp upstream