rs32669742 SNP Detail

Summary

• ID
  rs32669742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83080423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTAACAT GGCAGAATTG AAATGAAAAT ATATTTGCCA
  CAGTGAAATA ATCTCCAAAC CACCTGATAG ATATTGGGGA CTGTTTCATA GGAAGCACGT
  Y
  TCAGCAGCTA GGTCTGGAGT CCAAGGGGAC ATGTTAAATG ATACGTGGTT ATTGTCATTT
  CAAATGTCCA AGTAAGACAC CCAAAAAGGC TTGGTTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46175595	mCV24054929	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C
ss51971194	NES14983397	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T		C	T	T	C		T
ss145303265	ENSMUSSNP1660969	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322735746	CHEV_8_84877693	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32669742					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971194	NES14983397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83080423 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	372 bp upstream
Tssr81944	transcription start site region 81944	314 bp upstream
Tssr81945	transcription start site region 81945	263 bp upstream
Tssr81946	transcription start site region 81946	210 bp upstream
Tssr81947	transcription start site region 81947	539 bp downstream