rs32670130 SNP Detail

Summary

• ID
  rs32670130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGTGCAG CATCGGGAGG GTCTGGGCCA
  GTACACTGGT GAGGAGCCAG ACTCACAGGC GCCCAGATCC TGAGCCTCCC AGCCCACAGT
  TCTAAGAGGT CCCAAGGCAT CCTTGGGCAG TGTCTCTACT TCTGGAAAAC AGCCCAGAGG
  Y
  TCTCCAGGCT GGGCCAAGCA AATCTGTTAT CATCGTGACA CCAACTATTC AGTTGAGCTT
  AGGCCTGTTA GGTGAGAATG CCTGGATGGG TCCCTTAAAG TAGCAAAGCC TTCCCCACCC
  TGAAATAGGG CAGACTGGGA GAGGATTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45177875	mCV23265295	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss145481836	ENSMUSSNP2278283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss319975145	CHEV_1_133641427	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32670130					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672588 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1831 bp proximal
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	821 bp downstream
Tssr8661	transcription start site region 8661	655 bp downstream