rs32671639 SNP Detail

Summary

• ID
  rs32671639
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA ACCAGTCGAC TTAACAAAGA
  K
  TCATATAAAT AACTTTATAA ACTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45678795	mCV24805072	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147518550	ENSMUSSNP5993761	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321345457	CHEV_4_133685837	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32671639					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857233 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	802 bp distal
Gm68742	predicted gene, 68742	311 bp upstream
Rr601575	regulatory region 601575	643 bp distal
Rr601576	regulatory region 601576	62 bp distal
Rr601577	regulatory region 601577	222 bp distal
Rr601578	regulatory region 601578	74 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1189 bp upstream
Tssr39537	transcription start site region 39537	1956 bp downstream
Tssr43870	transcription start site region 43870	1949 bp upstream
Tssr43871	transcription start site region 43871	1899 bp upstream
Tssr43872	transcription start site region 43872	1872 bp upstream
Tssr43873	transcription start site region 43873	1846 bp upstream
Tssr43874	transcription start site region 43874	1831 bp upstream
Tssr43875	transcription start site region 43875	1222 bp upstream
Tssr43876	transcription start site region 43876	1152 bp upstream
Tssr43877	transcription start site region 43877	311 bp upstream