rs32672118 SNP Detail

Summary

• ID
  rs32672118
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150321306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGCTCA GTGCGCAGGC
  GCAGTATCCA TGCATTTCCC CCTCATCCCC CCCACCCCCA CCCAATTCCA CGCGGGAGTG
  AGGCCCTCTG GCCGCGCATC AACGTTTCCA CACCGCCGGG GGCTCCAGAA CCTCCCGGTG
  GGGGGTTGGC CGGCTGGAGG GCCGAGCCGC GAAGGTCATC AGCAAGGTCG TGGGCCGGAC
  K
  TGTGGCGCCG CAGCCACGCC GAGTGCGTGT GAGACTCGGA GTACGTGCGG CGGGCTCAAG
  CCCTCATGCC CGCCGCGCAG CCCAGCCCCG CCCCGCCCCG CATCCGGGCT CCGTAGACCC
  TCGGCCGGGC CCCAGGTTCC CAGCCGGAGG CTCGCCAGGC ATTCCAGCTA TGCCCCAAGC
  AGGCTAGGCC CAGAAAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712592	NES10999555	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32672118					SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712592	NES10999555	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150321306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	within coordinates
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	within coordinates
Rr605238	regulatory region 605238	1733 bp distal
Rr605239	regulatory region 605239	within coordinates
Tssr40390	transcription start site region 40390	82 bp downstream
Tssr40391	transcription start site region 40391	69 bp downstream
Tssr40392	transcription start site region 40392	53 bp downstream
Tssr40393	transcription start site region 40393	40 bp downstream
Tssr40394	transcription start site region 40394	30 bp downstream
Tssr40395	transcription start site region 40395	353 bp upstream
Tssr40396	transcription start site region 40396	362 bp upstream
Tssr40397	transcription start site region 40397	454 bp upstream
Tssr40398	transcription start site region 40398	845 bp upstream
Tssr40399	transcription start site region 40399	874 bp upstream