rs32672121 SNP Detail

Summary

• ID
  rs32672121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150321309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTCAGTG CGCAGGCGCA
  GTATCCATGC ATTTCCCCCT CATCCCCCCC ACCCCCACCC AATTCCACGC GGGAGTGAGG
  CCCTCTGGCC GCGCATCAAC GTTTCCACAC CGCCGGGGGC TCCAGAACCT CCCGGTGGGG
  GGTTGGCCGG CTGGAGGGCC GAGCCGCGAA GGTCATCAGC AAGGTCGTGG GCCGGACGTG
  Y
  GGCGCCGCAG CCACGCCGAG TGCGTGTGAG ACTCGGAGTA CGTGCGGCGG GCTCAAGCCC
  TCATGCCCGC CGCGCAGCCC AGCCCCGCCC CGCCCCGCAT CCGGGCTCCG TAGACCCTCG
  GCCGGGCCCC AGGTTCCCAG CCGGAGGCTC GCCAGGCATT CCAGCTATGC CCCAAGCAGG
  CTAGGCCCAG AAAGGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712595	NES10999556	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32672121					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712595	NES10999556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150321309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	within coordinates
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	within coordinates
Rr605238	regulatory region 605238	1736 bp distal
Rr605239	regulatory region 605239	within coordinates
Tssr40390	transcription start site region 40390	85 bp downstream
Tssr40391	transcription start site region 40391	72 bp downstream
Tssr40392	transcription start site region 40392	56 bp downstream
Tssr40393	transcription start site region 40393	43 bp downstream
Tssr40394	transcription start site region 40394	33 bp downstream
Tssr40395	transcription start site region 40395	350 bp upstream
Tssr40396	transcription start site region 40396	359 bp upstream
Tssr40397	transcription start site region 40397	451 bp upstream
Tssr40398	transcription start site region 40398	842 bp upstream
Tssr40399	transcription start site region 40399	871 bp upstream