rs32672123 SNP Detail

Summary

• ID
  rs32672123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150321418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGGGGG CTCCAGAACC
  TCCCGGTGGG GGGTTGGCCG GCTGGAGGGC CGAGCCGCGA AGGTCATCAG CAAGGTCGTG
  GGCCGGACGT GTGGCGCCGC AGCCACGCCG AGTGCGTGTG AGACTCGGAG TACGTGCGGC
  GGGCTCAAGC CCTCATGCCC GCCGCGCAGC CCAGCCCCGC CCCGCCCCGC ATCCGGGCTC
  Y
  GTAGACCCTC GGCCGGGCCC CAGGTTCCCA GCCGGAGGCT CGCCAGGCAT TCCAGCTATG
  CCCCAAGCAG GCTAGGCCCA GAAAGGCAGG ACAACCCCCG CCCCCGTGCC CTCGCCCCTA
  GTCTGGGCAG GCCGAGCGGC CGCCTCGGTC ACGCTCTTCT ATTGGAGTGA TGGCACGCTG
  AGCCAATGGG GAGGCGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712598	NES10999557	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32672123					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712598	NES10999557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150321418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15348	CpG island 15348			within coordinates
Eno1	enolase 1, alpha non-neuron			Intron
				mRNA-UTR
Rr377416	regulatory region 377416			within coordinates
Rr605238	regulatory region 605238			1845 bp distal
Rr605239	regulatory region 605239			within coordinates
Tssr40390	transcription start site region 40390			194 bp downstream
Tssr40391	transcription start site region 40391			181 bp downstream
Tssr40392	transcription start site region 40392			165 bp downstream
Tssr40393	transcription start site region 40393			152 bp downstream
Tssr40394	transcription start site region 40394			142 bp downstream
Tssr40395	transcription start site region 40395			241 bp upstream
Tssr40396	transcription start site region 40396			250 bp upstream
Tssr40397	transcription start site region 40397			342 bp upstream
Tssr40398	transcription start site region 40398			733 bp upstream
Tssr40399	transcription start site region 40399			762 bp upstream