rs32672741 SNP Detail

Summary

• ID
  rs32672741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150224957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG TGGCTCTTGA TGTGAGGGCT
  Y
  ATTTAAGAGT GGGCAGCTGG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45695502	mCV25096424	ABI	CRAMUS_MOUSE	f	SNP	C				C	T
ss46712112	NES11004658	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T	T	C		C	T	T
ss148048307	ENSMUSSNP2764768	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					T
ss321428351	CHEV_4_149514609	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32672741					SNP	C	T	T	T	C	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712112	NES11004658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150224957 () rs orientation: forward

Symbol	Name	Function Class
Rr605197	regulatory region 605197	1782 bp distal
Rr605198	regulatory region 605198	1107 bp distal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	within coordinates
Tssr1384	transcription start site region 1384	1157 bp downstream
Tssr40375	transcription start site region 40375	980 bp downstream
Tssr40376	transcription start site region 40376	1783 bp upstream