rs32672743 SNP Detail

Summary

• ID
  rs32672743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150225380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGAAGCT CACAGTCTTC
  CTTCCCACAC CTCCAGATCT TTGTGGTAGA GCTTTGGGGA CGGCGATTCC TACTCCTCGT
  CGGCTTCTCC ACCTGCCTCA TAGCCTGCTT AGTGCTGACG GCCGCACTGG CGCTGCAGGT
  AAGGAGCGCT GTGCTGATGA TCCATGTAAA GGGACCTCGG AGAAGGTGGC ATCACATCAA
  R
  AAATGAGACG GGAGAGAGAC CCTCTCGGGG TTCTTTAAAC AAAGAGTGAG GCCACGTTGG
  AGTTCTCCTT ATCTCACCTG TGCCCCCAAC CTGTCTGCAG TTTATGGCCT GTGCTGTGTG
  TGTTTCTGAT GCCTGTCTCT AACAAAGGGC TTTGTTCTGT GTTGATTGTC TTTATTGAAA
  TACTATGAGA TTGAGCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46712115	NES11004661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32672743					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712115	NES11004661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150225380 () rs orientation: forward

Symbol	Name	Function Class
Rr605198	regulatory region 605198	1530 bp distal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	within coordinates
Tssr1384	transcription start site region 1384	1580 bp downstream
Tssr40375	transcription start site region 40375	1403 bp downstream
Tssr40376	transcription start site region 40376	1360 bp upstream