rs32672759 SNP Detail

Summary

• ID
  rs32672759
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69542685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCTGAAGCT TTCGGTTGTA TAGAATCAAA CCTCTTCACG GCTCCCTTAA AGCCAGGCAG
  AGAGCTTTGA AAGAAGACTT TTTTTTCCCT CTTTTTTAAG TATCTGTTGT TTTCCTGAAA
  ATAAGGTTCC ATTTGCACAG GTTAATTGGC AGCTTGGCTC TGTGGGTGGC TCATTGGTTA
  AAAGCGTTTC AGCTGAAGGG TTTTAGCTAG GCGCCCTCCA GCCTGACTAA TCCTGTCCTG
  AGCTGTCAGT GGGTCATGTG ATAACACTGC AGCGAGGGGA AGGGAAAAAA AAAAAAAAAA
  M
  ACACACACAT TGGAGAGTGG ATTGCTGAGG TGTGCCTTTT AAGCATTTTT TTAGAATAAT
  TGTTAAAATT AGAGAATGCC TGTTAGGGGT TCATGTGAGC CCAAGGAAAC GTCGGGAAAA
  CTGACAGATT TATACCTGAG AATTACAGAA TCTCTAGAAT TGCATTTGAT ATGTATGCTT
  TGCTCTGAGC AGAGCACATA GACACTGGTG TGGCTTCTAA GGGAAAAATG TTACAAGGTT
  ATAGTAGTCT CTTTCCATAT AACAAGTCAT TCAGAGCCAA TTCAGGGAGT GTCGACTACT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46175635	mCV22776478	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32672759					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69542685 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	Intron
Cpgi20406	CpG island 20406	619 bp distal
Rr400869	regulatory region 400869	1246 bp downstream
Rr664484	regulatory region 664484	1377 bp distal
Rr664485	regulatory region 664485	321 bp distal
Rr664486	regulatory region 664486	818 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	mRNA-UTR
Tssr77656	transcription start site region 77656	1306 bp downstream
Tssr77657	transcription start site region 77657	1289 bp downstream
Tssr77658	transcription start site region 77658	1237 bp downstream
Tssr81518	transcription start site region 81518	818 bp upstream