rs32672886 SNP Detail

Summary

• ID
  rs32672886
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150321451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG CCGGGCCCCA GGTTCCCAGC
  S
  GGAGGCTCGC CAGGCATTCC AGCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45716890	mCV24222420	ABI	CRAMUS_MOUSE	f	SNP		G				C	G
ss46712601	NES10999558	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	G	C		G		G
ss148050642	ENSMUSSNP826709	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss321428728	CHEV_4_149611103	CHEVERUD	SCREENING_POP	f	SNP										C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs32672886					SNP	G	G	G	G	G	C	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712601	NES10999558	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150321451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	within coordinates
Eno1	enolase 1, alpha non-neuron	within coordinates
Rr377416	regulatory region 377416	within coordinates
Rr605238	regulatory region 605238	1878 bp distal
Rr605239	regulatory region 605239	32 bp distal
Tssr40390	transcription start site region 40390	227 bp downstream
Tssr40391	transcription start site region 40391	214 bp downstream
Tssr40392	transcription start site region 40392	198 bp downstream
Tssr40393	transcription start site region 40393	185 bp downstream
Tssr40394	transcription start site region 40394	175 bp downstream
Tssr40395	transcription start site region 40395	208 bp upstream
Tssr40396	transcription start site region 40396	217 bp upstream
Tssr40397	transcription start site region 40397	309 bp upstream
Tssr40398	transcription start site region 40398	700 bp upstream
Tssr40399	transcription start site region 40399	729 bp upstream