rs32673413 SNP Detail

Summary

• ID
  rs32673413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTAGCTG CTCTTCCAGA
  GGTCCTGAGT TCAATTCCCA GAAACCATAT GGTGGCTCAC AACCATCTGT AAAGGAATCT
  GATTCCATCT TCTGGTGTGT CTGAAGACAG AGCGCTCATG TACCTAAGAT AAGGAAGAAA
  GGAAGGGAGG GAAGGAGGGA GGGAGACAAG GAAGGAGCTA ACAACTCCAT GTTGGCCTCT
  S
  TCATTTCTTC TGAAGCATCA GAGGGGTCTT CATCCTCAGC TTGGGGATAT GAGCCTGTCT
  GCATCTCACT CAGGCTGACA CCTCAGTTGT TTTTGGATTT AGGGTTGGGA GGCTGGCTAA
  ACATGTGGCA TCTGGAAAGA CAAATCCCCA AACCTGGGGG ACCAGGGTGA GGTGAAAGGG
  GGAACCCCTT GGAAAGCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47697286	NES11321027	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G	G	G	C	C	G	G	G	G
ss136424987	ENSMUSSNP5123460	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32673413					SNP	C	C	G	G	G	G	G	G	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697286	NES11321027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139390 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	538 bp upstream
Cpgi21701	CpG island 21701	1854 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Tssr84839	transcription start site region 84839	255 bp upstream
Tssr84840	transcription start site region 84840	609 bp upstream
Tssr84841	transcription start site region 84841	741 bp upstream
Tssr84842	transcription start site region 84842	836 bp upstream
Tssr84843	transcription start site region 84843	859 bp upstream
Tssr84844	transcription start site region 84844	1018 bp upstream
Tssr84845	transcription start site region 84845	1070 bp upstream
Tssr84846	transcription start site region 84846	1109 bp upstream
Tssr84847	transcription start site region 84847	1730 bp upstream
Tssr84848	transcription start site region 84848	1817 bp upstream
Tssr84849	transcription start site region 84849	1909 bp upstream
Tssr84850	transcription start site region 84850	1949 bp upstream
Tssr84851	transcription start site region 84851	1993 bp upstream
Tssr89313	transcription start site region 89313	1842 bp downstream
Tssr89314	transcription start site region 89314	1902 bp downstream
Tssr89315	transcription start site region 89315	1916 bp downstream
Tssr89316	transcription start site region 89316	1944 bp downstream
Tssr89317	transcription start site region 89317	1956 bp downstream
Tssr89318	transcription start site region 89318	1978 bp downstream
Tssr89319	transcription start site region 89319	1992 bp downstream