rs32674275 SNP Detail

Summary

• ID
  rs32674275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCAAAC CTGGGGGACC
  AGGGTGAGGT GAAAGGGGGA ACCCCTTGGA AAGCAAAAAA AAAACTTTGG GGTGGGGCTG
  TGAGTGAAGG AGCCCACAAT TCCTCCCTCC CTCCCTTGTT CCAGGCTCAG AGGGCACTAG
  CAACACAGAG GAGTCCAGGA GTGGGCTCCA TGAGACTATC TTGAAGAAGA CATACACCTC
  R
  GGATGGTGCA ACTGCCTTAC CCCTGGGGAC CCCTGGAGTC TGCAGCCACC CCCTGCTGCC
  CCCACCTGAA CCCTTGATCC CAGCTCGGCA GCCCCCGCAG TTTCCTGTTT GCCCACTCTG
  TTTGCCCAGC CTCAGGAACA GAGCTGATCC TTGAACTCTA AGTTCCACAT CGCCAGCAAA
  AGTAAGCAGT GGCAGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47697288	NES11321030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32674275					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697288	NES11321030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139734 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	194 bp upstream
Cpgi21701	CpG island 21701	1510 bp proximal
Gm67994	predicted gene, 67994	139 bp downstream
Rr195182	regulatory region 195182	267 bp proximal
Rr195183	regulatory region 195183	1067 bp proximal
Rr206362	regulatory region 206362	266 bp proximal
Rr209245	regulatory region 209245	1720 bp distal
Tssr84839	transcription start site region 84839	62 bp downstream
Tssr84840	transcription start site region 84840	265 bp upstream
Tssr84841	transcription start site region 84841	397 bp upstream
Tssr84842	transcription start site region 84842	492 bp upstream
Tssr84843	transcription start site region 84843	515 bp upstream
Tssr84844	transcription start site region 84844	674 bp upstream
Tssr84845	transcription start site region 84845	726 bp upstream
Tssr84846	transcription start site region 84846	765 bp upstream
Tssr84847	transcription start site region 84847	1386 bp upstream
Tssr84848	transcription start site region 84848	1473 bp upstream
Tssr84849	transcription start site region 84849	1565 bp upstream
Tssr84850	transcription start site region 84850	1605 bp upstream
Tssr84851	transcription start site region 84851	1649 bp upstream
Tssr84852	transcription start site region 84852	1668 bp upstream
Tssr84853	transcription start site region 84853	1766 bp upstream
Tssr84854	transcription start site region 84854	1796 bp upstream
Tssr84855	transcription start site region 84855	1815 bp upstream
Tssr84856	transcription start site region 84856	1831 bp upstream
Tssr84857	transcription start site region 84857	1949 bp upstream
Tssr84858	transcription start site region 84858	1968 bp upstream
Tssr89313	transcription start site region 89313	1498 bp downstream
Tssr89314	transcription start site region 89314	1558 bp downstream
Tssr89315	transcription start site region 89315	1572 bp downstream
Tssr89316	transcription start site region 89316	1600 bp downstream
Tssr89317	transcription start site region 89317	1612 bp downstream
Tssr89318	transcription start site region 89318	1634 bp downstream
Tssr89319	transcription start site region 89319	1648 bp downstream
Tssr89320	transcription start site region 89320	1657 bp downstream
Tssr89321	transcription start site region 89321	1679 bp downstream
Tssr89322	transcription start site region 89322	1725 bp downstream
Tssr89323	transcription start site region 89323	1790 bp downstream
Tssr89324	transcription start site region 89324	1840 bp downstream
Tssr89325	transcription start site region 89325	1864 bp downstream
Tssr89326	transcription start site region 89326	1904 bp downstream