rs32674278 SNP Detail

Summary

• ID
  rs32674278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCGGGGA GGTAAGTGCT GCTACCTGCC TTCGGTGGCT
  CTGGCTCCAT AGCGCCTCCC AGTTGATGCT CCACTGTCCA AATCAATACC GTGGATATCT
  Y
  GCACCTTTAG CCATTCTAGC CAATGCTTCC ATGGGCTTGA ATTGTGTGTG GAGCCTTTCC
  ATGACAATGC CTCCCTTCAG CCCAGCCCTC CTCCTCCTTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47697292	NES11321034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32674278					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697292	NES11321034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140124 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	1120 bp proximal
Gm67994	predicted gene, 67994	529 bp downstream
Rr195182	regulatory region 195182	within coordinates
Rr195183	regulatory region 195183	677 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	452 bp downstream
Tssr84840	transcription start site region 84840	112 bp downstream
Tssr84841	transcription start site region 84841	7 bp upstream
Tssr84842	transcription start site region 84842	102 bp upstream
Tssr84843	transcription start site region 84843	125 bp upstream
Tssr84844	transcription start site region 84844	284 bp upstream
Tssr84845	transcription start site region 84845	336 bp upstream
Tssr84846	transcription start site region 84846	375 bp upstream
Tssr84847	transcription start site region 84847	996 bp upstream
Tssr84848	transcription start site region 84848	1083 bp upstream
Tssr84849	transcription start site region 84849	1175 bp upstream
Tssr84850	transcription start site region 84850	1215 bp upstream
Tssr84851	transcription start site region 84851	1259 bp upstream
Tssr84852	transcription start site region 84852	1278 bp upstream
Tssr84853	transcription start site region 84853	1376 bp upstream
Tssr84854	transcription start site region 84854	1406 bp upstream
Tssr84855	transcription start site region 84855	1425 bp upstream
Tssr84856	transcription start site region 84856	1441 bp upstream
Tssr84857	transcription start site region 84857	1559 bp upstream
Tssr84858	transcription start site region 84858	1578 bp upstream
Tssr89313	transcription start site region 89313	1108 bp downstream
Tssr89314	transcription start site region 89314	1168 bp downstream
Tssr89315	transcription start site region 89315	1182 bp downstream
Tssr89316	transcription start site region 89316	1210 bp downstream
Tssr89317	transcription start site region 89317	1222 bp downstream
Tssr89318	transcription start site region 89318	1244 bp downstream
Tssr89319	transcription start site region 89319	1258 bp downstream
Tssr89320	transcription start site region 89320	1267 bp downstream
Tssr89321	transcription start site region 89321	1289 bp downstream
Tssr89322	transcription start site region 89322	1335 bp downstream
Tssr89323	transcription start site region 89323	1400 bp downstream
Tssr89324	transcription start site region 89324	1450 bp downstream
Tssr89325	transcription start site region 89325	1474 bp downstream
Tssr89326	transcription start site region 89326	1514 bp downstream
Tssr89327	transcription start site region 89327	1635 bp downstream