rs32674280 SNP Detail

Summary

• ID
  rs32674280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCAGGATG AAAGCTGTGG TGCTGGCCGT GGCTCTGGTC
  TTCCTGACAG GTAGGTGCCT CTTGACCTGC GTGGGACTAC CTTCCTGGGC ACAGAGAACA
  R
  AATTCCCACT GTTCTCTTCC CTGACTCCGA GTCTAACCTA ACATGGGTCT CCCCTCCATC
  CCCAGGGAGC CAGGCTTGGC ACGTATGGCA GCAAGATGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47697294	NES11321036	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32674280					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697294	NES11321036	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140348 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	896 bp proximal
Gm67994	predicted gene, 67994	753 bp downstream
Rr195182	regulatory region 195182	148 bp distal
Rr195183	regulatory region 195183	453 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	676 bp downstream
Tssr84840	transcription start site region 84840	336 bp downstream
Tssr84841	transcription start site region 84841	206 bp downstream
Tssr84842	transcription start site region 84842	104 bp downstream
Tssr84843	transcription start site region 84843	70 bp downstream
Tssr84844	transcription start site region 84844	60 bp upstream
Tssr84845	transcription start site region 84845	112 bp upstream
Tssr84846	transcription start site region 84846	151 bp upstream
Tssr84847	transcription start site region 84847	772 bp upstream
Tssr84848	transcription start site region 84848	859 bp upstream
Tssr84849	transcription start site region 84849	951 bp upstream
Tssr84850	transcription start site region 84850	991 bp upstream
Tssr84851	transcription start site region 84851	1035 bp upstream
Tssr84852	transcription start site region 84852	1054 bp upstream
Tssr84853	transcription start site region 84853	1152 bp upstream
Tssr84854	transcription start site region 84854	1182 bp upstream
Tssr84855	transcription start site region 84855	1201 bp upstream
Tssr84856	transcription start site region 84856	1217 bp upstream
Tssr84857	transcription start site region 84857	1335 bp upstream
Tssr84858	transcription start site region 84858	1354 bp upstream
Tssr89313	transcription start site region 89313	884 bp downstream
Tssr89314	transcription start site region 89314	944 bp downstream
Tssr89315	transcription start site region 89315	958 bp downstream
Tssr89316	transcription start site region 89316	986 bp downstream
Tssr89317	transcription start site region 89317	998 bp downstream
Tssr89318	transcription start site region 89318	1020 bp downstream
Tssr89319	transcription start site region 89319	1034 bp downstream
Tssr89320	transcription start site region 89320	1043 bp downstream
Tssr89321	transcription start site region 89321	1065 bp downstream
Tssr89322	transcription start site region 89322	1111 bp downstream
Tssr89323	transcription start site region 89323	1176 bp downstream
Tssr89324	transcription start site region 89324	1226 bp downstream
Tssr89325	transcription start site region 89325	1250 bp downstream
Tssr89326	transcription start site region 89326	1290 bp downstream
Tssr89327	transcription start site region 89327	1411 bp downstream