rs32675401 SNP Detail

Summary

• ID
  rs32675401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA AAATGGAAAG CTGGCCCTGC
  R
  GTGTGTTTTC TCCTGATCCG GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46315105	mCV24051274	ABI	CRAMUS_MOUSE	f	SNP	G	G					A	G
ss47697316	NES11320944	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	A	G		G	G		G	A		A
ss136425020	ENSMUSSNP5149318	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss322944011	CHEV_9_46040368	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32675401					SNP	G	G	A	G	A	G	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697316	NES11320944	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143583 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1816 bp downstream
Apoc3	apolipoprotein C-III	765 bp downstream
Cpgi21701	CpG island 21701	1780 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1070 bp proximal
Rr206362	regulatory region 206362	1182 bp distal
Rr206363	regulatory region 206363	1217 bp proximal
Rr206364	regulatory region 206364	1817 bp proximal
Tssr84857	transcription start site region 84857	1889 bp downstream
Tssr84858	transcription start site region 84858	1852 bp downstream
Tssr84859	transcription start site region 84859	847 bp upstream
Tssr84860	transcription start site region 84860	986 bp upstream
Tssr84861	transcription start site region 84861	1032 bp upstream
Tssr89324	transcription start site region 89324	1995 bp upstream
Tssr89325	transcription start site region 89325	1970 bp upstream
Tssr89326	transcription start site region 89326	1936 bp upstream
Tssr89327	transcription start site region 89327	1822 bp upstream
Tssr89328	transcription start site region 89328	814 bp downstream
Tssr89329	transcription start site region 89329	885 bp downstream
Tssr89330	transcription start site region 89330	931 bp downstream
Tssr89331	transcription start site region 89331	964 bp downstream
Tssr89332	transcription start site region 89332	1039 bp downstream