rs32675403 SNP Detail

Summary

• ID
  rs32675403
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGTTT CCCGGTGTGG
  ACAATGAGAC TTCTGGCTCT TGGTGGACAG GAAGAGAAAC CCCTATTGGA TTTCCAGAGA
  GAACATAGTC CAGTCTGCTG GCTGTGCCAA TGCAGTCTGG AAAGGAGCTT CCAACACCTG
  GCAGAGGCTT TTCCGGTGCC AGCAACGTGG AAAATGGAAA GCTGGCCCTG CAGTGTGTTT
  K
  CTCCTGATCC GGGGCAGCCA CTGGCACTCT CTGAACATTA GTCTTTTACT CTATAATGTG
  CAAGACCTGT TTTGTGACAC TGGGTCTCTT TGAAGTGAGT GTTTGGGGGT GGCAGGAACT
  TAGCAAGCAG CCCTTTTGGG ATTCTGAGGA CACTGGGTCT CCATTCCAGT CTAGAAGGTC
  ACCTAGTTTA GCTATCACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47697318	NES11320946	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	G	G	T	T	T
ss136425023	ENSMUSSNP5011542	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32675403					SNP	G	T	T	T	T	T	G	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697318	NES11320946	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143592 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1825 bp downstream
Apoc3	apolipoprotein C-III	756 bp downstream
Cpgi21701	CpG island 21701	1789 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1061 bp proximal
Rr206362	regulatory region 206362	1191 bp distal
Rr206363	regulatory region 206363	1208 bp proximal
Rr206364	regulatory region 206364	1808 bp proximal
Tssr84857	transcription start site region 84857	1898 bp downstream
Tssr84858	transcription start site region 84858	1861 bp downstream
Tssr84859	transcription start site region 84859	838 bp upstream
Tssr84860	transcription start site region 84860	977 bp upstream
Tssr84861	transcription start site region 84861	1023 bp upstream
Tssr89325	transcription start site region 89325	1979 bp upstream
Tssr89326	transcription start site region 89326	1945 bp upstream
Tssr89327	transcription start site region 89327	1831 bp upstream
Tssr89328	transcription start site region 89328	805 bp downstream
Tssr89329	transcription start site region 89329	876 bp downstream
Tssr89330	transcription start site region 89330	922 bp downstream
Tssr89331	transcription start site region 89331	955 bp downstream
Tssr89332	transcription start site region 89332	1030 bp downstream