rs32676605 SNP Detail

Summary

• ID
  rs32676605
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAAGGAG CTTCCAACAC CTGGCAGAGG CTTTTCCGGT
  GCCAGCAACG TGGAAAATGG AAAGCTGGCC CTGCAGTGTG TTTTCTCCTG ATCCGGGGCA
  K
  CCACTGGCAC TCTCTGAACA TTAGTCTTTT ACTCTATAAT GTGCAAGACC TGTTTTGTGA
  CACTGGGTCT CTTTGAAGTG AGTGTTTGGG GGTGGCAGGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47697320	NES11320948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32676605					SNP	G	G	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697320	NES11320948	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143609 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1842 bp downstream
Apoc3	apolipoprotein C-III	739 bp downstream
Cpgi21701	CpG island 21701	1806 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1044 bp proximal
Rr206362	regulatory region 206362	1208 bp distal
Rr206363	regulatory region 206363	1191 bp proximal
Rr206364	regulatory region 206364	1791 bp proximal
Tssr84857	transcription start site region 84857	1915 bp downstream
Tssr84858	transcription start site region 84858	1878 bp downstream
Tssr84859	transcription start site region 84859	821 bp upstream
Tssr84860	transcription start site region 84860	960 bp upstream
Tssr84861	transcription start site region 84861	1006 bp upstream
Tssr89325	transcription start site region 89325	1996 bp upstream
Tssr89326	transcription start site region 89326	1962 bp upstream
Tssr89327	transcription start site region 89327	1848 bp upstream
Tssr89328	transcription start site region 89328	788 bp downstream
Tssr89329	transcription start site region 89329	859 bp downstream
Tssr89330	transcription start site region 89330	905 bp downstream
Tssr89331	transcription start site region 89331	938 bp downstream
Tssr89332	transcription start site region 89332	1013 bp downstream