rs32677228 SNP Detail

Summary

• ID
  rs32677228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131650811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCACTG CACTCGGCGG
  CGGCGGCAGC TTCCCTTCCC AGGTATTAAA TTAATTTTCC CATGCTTTTG TTAGAAGAGA
  ACTTTAAAAG TGGATCAATC CTCACAGTCA GGCTTTTTTT TTTTTTTTTA AAGTTTATTG
  AAAAATGCCA TACAAGAAGC AAGACCAAAC ACCTAAACAC TACAGCCACA TCTGTCACTA
  Y
  GAAAGGCGCA GACAGCAGGC CCAGTTACTG CCTATCTCAC CTAGGGGGTT TTCGGTTGGA
  CTCTGCCGGC ATAGTTCCTA TTTTGTCAAA TGTAAACAAC TACTTGATAC GATTCATAAT
  TTTTAAAAAA TTTACAAAGC TCCTTCATTT TTGTCATGAA AATAATATAT CTGAGAGAGA
  TTTGTAAAAA CAACCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45679350	mCV22797925	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147471974	ENSMUSSNP4357422	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321329106	CHEV_4_131479415	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32677228					SNP	T	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131650811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	561 bp distal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm50475	predicted gene, 50475	1972 bp upstream
Rr85752	regulatory region 85752	1390 bp proximal
Rr100128	regulatory region 100128	410 bp distal
Tmem200b	transmembrane protein 200B	360 bp downstream
Tssr1320	transcription start site region 1320	1806 bp downstream
Tssr39360	transcription start site region 39360	69 bp downstream