rs32678222 SNP Detail

Summary

• ID
  rs32678222
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85438159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG TCCACTCACT AAAAGCCAGG
  W
  AAGGACCTTG AAAGCTGAAG TGGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46176876	mCV24193681	ABI	CRAMUS_MOUSE	f	SNP		A	A				T		A
ss60644201	NES16268968	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A			T	T		A
ss145392437	ENSMUSSNP1712293	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322751421	CHEV_8_87235429	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs32678222					SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644201	NES16268968	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85438159 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1559 bp distal
Rr178193	regulatory region 178193	within coordinates
Rr178194	regulatory region 178194	1042 bp proximal
Rr187003	regulatory region 187003	241 bp proximal