rs32680314 SNP Detail

Summary

• ID
  rs32680314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10108741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTGGAGG GGGAAGATCG CGTGACTCTT
  TTAAGATAAT TTGCGGTGTG TTAAGCCTCC GGGGTTTGTG GTTGGCGTTC CGCTTTTGTG
  TTTTCGCTAC TGTTGCGAGG TGGCAAGCAA AAGTTACCGG TTGCTAAGAT TAACTTTTTT
  R
  GGGACTTTAT AGGGTAACAT TTTATACAAG TGTTAGGAGC GGTGAATGCC TTAGGCGCTA
  CTTTTTAAAA AAGGTTTGTC TCAGTGCAGA TTTAATCTCC GCAACCTGTG CCTTCCAGCA
  GTTAATGTGA AATTTGTTTC AGTCGTATTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45179140	mCV23215958	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss148572951	ENSMUSSNP6368340	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss319632127	CHEV_1_10028597	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32680314					SNP	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10108741 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	357 bp upstream
Cpgi31	CpG island 31	73 bp distal
Cpgi32	CpG island 32	1005 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	1482 bp upstream
Rr407692	regulatory region 407692	600 bp distal
Rr407693	regulatory region 407693	244 bp distal
Rr407694	regulatory region 407694	within coordinates
Rr407695	regulatory region 407695	767 bp proximal
Rr407696	regulatory region 407696	1160 bp proximal
Rr407697	regulatory region 407697	1280 bp proximal
Tssr4	transcription start site region 4	288 bp downstream
Tssr5924	transcription start site region 5924	1246 bp upstream
Tssr5925	transcription start site region 5925	1281 bp upstream
Tssr5926	transcription start site region 5926	1308 bp upstream
Tssr10955	transcription start site region 10955	622 bp upstream
Tssr10956	transcription start site region 10956	585 bp upstream
Tssr10957	transcription start site region 10957	548 bp upstream
Tssr10958	transcription start site region 10958	347 bp upstream
Tssr10959	transcription start site region 10959	1491 bp downstream