rs32680334 SNP Detail

Summary

• ID
  rs32680334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152779440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC CGGGCCCGAG AAGAAAAGGC
  R
  GGTTATGAAG GCCGGCGGCG AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45179332	mCV22618764	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145735438	ENSMUSSNP2589498	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32680334					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152779440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	997 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1928 bp distal
Gm70930	predicted gene, 70930	368 bp upstream
Rr396386	regulatory region 396386	1062 bp downstream
Rr396387	regulatory region 396387	256 bp downstream
Rr396388	regulatory region 396388	844 bp upstream
Rr420557	regulatory region 420557	1078 bp distal
Rr420558	regulatory region 420558	553 bp distal
Rr420559	regulatory region 420559	within coordinates
Rr420560	regulatory region 420560	379 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	1043 bp upstream
Tssr9437	transcription start site region 9437	816 bp downstream
Tssr9438	transcription start site region 9438	767 bp downstream
Tssr9439	transcription start site region 9439	114 bp upstream
Tssr14242	transcription start site region 14242	1020 bp upstream
Tssr14243	transcription start site region 14243	939 bp upstream
Tssr14244	transcription start site region 14244	910 bp upstream
Tssr14245	transcription start site region 14245	602 bp upstream
Tssr14246	transcription start site region 14246	571 bp upstream