rs32683978 SNP Detail

Summary

• ID
  rs32683978
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150532441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCTGTGT GGGCTGGGCA
  AGTACTCTAC TCTATTGCTG AACCAGCTAA ATCACAAGTC TTCCTGGTTC CCTCAAAGAG
  AGGGACAGGC CCGTTCAGTT CTCTAGGTTT TGTCATATTG ACTTGCATCT GACATACTGA
  CTGAGGAGCT TTTGTACCTG GGTCAGTTTT TTCTAGGCCA GTCTACAGTC TACAGAAGTG
  W
  AGCTGTATTC CTACATGCAG GTGCTTCCTG CCCCTCTAGA GAGAACTGCC ATGTTTTGTG
  TAGTTGTCCA GGAATGATTA CACATTACCT CTTGATAGAT GCTTTATTCT CTTAAAGATT
  GATTTTTAAA ATATTTATAT GTTTTTGCTT GCATGTATGC TTATGTACCA TGTGAGTACC
  TGGTCAGAGA AGTCAGAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46714836	NES11012764	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32683978					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714836	NES11012764	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150532441 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377422	regulatory region 377422	489 bp downstream
Rr605301	regulatory region 605301	901 bp distal
Rr605302	regulatory region 605302	132 bp distal