rs32683981 SNP Detail

Summary

• ID
  rs32683981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150532538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCTAGG TTTTGTCATA
  TTGACTTGCA TCTGACATAC TGACTGAGGA GCTTTTGTAC CTGGGTCAGT TTTTTCTAGG
  CCAGTCTACA GTCTACAGAA GTGTAGCTGT ATTCCTACAT GCAGGTGCTT CCTGCCCCTC
  TAGAGAGAAC TGCCATGTTT TGTGTAGTTG TCCAGGAATG ATTACACATT ACCTCTTGAT
  R
  GATGCTTTAT TCTCTTAAAG ATTGATTTTT AAAATATTTA TATGTTTTTG CTTGCATGTA
  TGCTTATGTA CCATGTGAGT ACCTGGTCAG AGAAGTCAGA GAAGCTGGAA TTAAAGATGG
  TTGTGAGCCA TCCTGTGGAT GCTGGGAATT GAACCTGGAT GCTTTGTAAG AACAGCCAGT
  GGTCCTAAAG GCTGCTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46714839	NES11012766	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss148053417	ENSMUSSNP5305320	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32683981					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714839	NES11012766	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150532538 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377422	regulatory region 377422	586 bp downstream
Rr605301	regulatory region 605301	998 bp distal
Rr605302	regulatory region 605302	229 bp distal