rs32683989 SNP Detail

Summary

• ID
  rs32683989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180040045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGAATC CCATCACAGC
  CACAGCCATG AGTGTTCTTC TAGCTGACAG AGGCTCTGGT GGCTTCACCT TGTGACTTCC
  AAGGGTGACA TGGGCACAGG GTTCAATGGC CAAACCTGGT AGCAGTGTCC ACCTCATGTG
  CCATTGCTTC ACCAGCTGAG ATGCAATTAC ACAGCCACAC CAAGTCAGGA AGTGCCAACT
  S
  TCTGTGAACC CAGATAATGG AAAAATACAT TAATTTGTGC AGTAGCTGAC AGGCTCCTGC
  AGACCCCTTA GGTTTTCCTT AATGCTGTGT TTTATAAAAA GATGAAGGCA AGAAGAAATA
  TGTTTTGGTA GAGGTGCAGT CAGGTGTGGG GAAAGGGGTG CCTCCATGGG CCCATGCTGA
  GGCACCCCTT CCCTGTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715035	NES10671312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32683989					SNP	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715035	NES10671312	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180040045 () rs orientation: forward

Symbol	Name	Function Class
Gm37336	predicted gene, 37336	within coordinates
Rr372536	regulatory region 372536	within coordinates
Rr424411	regulatory region 424411	1952 bp distal
Rr424412	regulatory region 424412	1165 bp distal