rs32684459 SNP Detail

Summary

• ID
  rs32684459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172332373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTACAGA TGCTCCGTTA CAACCTAAGG GTTGACGGAG
  GGTAGTTTAC TCGCTCCCGC TCTTGGCATA GGTTTCCCAT ATGCTCTGTA CTCTCATTTC
  Y
  TGAATCATTT TTAAGGCTTC AAAGAGGAGG GTTGGGGGCT AGACCTCGCC TCTGTCAAGC
  TTCATCACTC CAAATGAGAA GCTGAACTAA AATCCTTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45179464	mCV24953241	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss120011637	PARCsnp_1.19897	PARC_SEQ	INBRED	f	SNP		C	T
ss120014575	PARCsnp_1.09944	PARC_SEQ	INBRED	f	SNP		C	T
ss146193922	ENSMUSSNP4766355	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320125770	CHEV_1_174434937	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32684459					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172332373 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	772 bp distal
Rr29014	regulatory region 29014	within coordinates
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	457 bp upstream
Tssr10220	transcription start site region 10220	945 bp upstream
Tssr10221	transcription start site region 10221	987 bp upstream
Tssr10222	transcription start site region 10222	1073 bp upstream
Tssr10223	transcription start site region 10223	1420 bp upstream
Tssr10224	transcription start site region 10224	1766 bp upstream
Tssr10225	transcription start site region 10225	1805 bp upstream
Tssr10226	transcription start site region 10226	1818 bp upstream
Tssr10227	transcription start site region 10227	1859 bp upstream
Tssr10228	transcription start site region 10228	1911 bp upstream
Tssr10229	transcription start site region 10229	1961 bp upstream
Tssr10230	transcription start site region 10230	1982 bp upstream