rs32684619 SNP Detail

Summary

• ID
  rs32684619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAGTCA GAATGTCCCA
  GTGTATAGAA CAACGTTACT GGCTGGAAAT GTATGTGGTA GAAACAAGTA AATAAAATAA
  AAGCACTATA AACATTTTGA AAACTTTGCC TATGGGACCA TTGAAGAGGA GGTAAAGATA
  AGGGGCAGGC AATGCTCAGG GTCACCTTCC ATCAGGAAGG GACAGTTCTC TTCCTTCCCA
  Y
  ACTTGCTACA AAGTCCTTCA TCTTCAGGGA GAGTAAGGGG AACACACAGA ATGTAAATAT
  TAATATAAAA TAAATAAAAT ATTAATATAA AATAAATAAA ATATTAATAT AAATTACTCT
  TCCATATTTT GGGGTGATTA ATTTACTGTA TGCTTGAGTT CATCTTGGAA GTCTTTCTTT
  TCTTTCTTTT CCTTTCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45179651	mCV22363995	ABI	CRAMUS_MOUSE	f	SNP		C				T		T
ss51413014	NES14449935	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T		C	T	T	T	T	T	C	C
ss146355569	ENSMUSSNP5786909	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32684619					SNP	T	C	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413014	NES14449935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1087 bp proximal
Efcab2	EF-hand calcium binding domain 2	1545 bp upstream
Gm70920	predicted gene, 70920	1370 bp downstream
Gm70923	predicted gene, 70923	1949 bp upstream
Rr20725	regulatory region 20725	1905 bp distal
Rr29069	regulatory region 29069	695 bp proximal
Rr372517	regulatory region 372517	681 bp upstream
Tssr10392	transcription start site region 10392	1477 bp upstream
Tssr10393	transcription start site region 10393	1491 bp upstream
Tssr10394	transcription start site region 10394	1498 bp upstream
Tssr10395	transcription start site region 10395	1512 bp upstream
Tssr10396	transcription start site region 10396	1532 bp upstream
Tssr10397	transcription start site region 10397	1955 bp upstream
Tssr15493	transcription start site region 15493	1875 bp downstream