rs32685679 SNP Detail

Summary

• ID
  rs32685679
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150534115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTTAAT AATTTGTCTT
  TGTTTCTCGG GGAAGTGAGG ATGACTCTAG TAGTAAATAA CTTAATGGCA TAGAATGTTC
  AGTAATCTAA TCGATGGTGG TCATTGAGAC TCTTTTTATT ATTATTATTT TTTTAGAAAT
  CTCTTGTTTA TATTGAAACA CAATAGATTA TAATTAGCCA TGACAAAATT TTCCAGTTTT
  W
  AAGAAATACT ACTACTTGAC AGATTTATCT AGAACCAGGG TAGTATTTGA GATTTTGGGT
  TTTTTTTGTT TGTTTGTTTT CAGTGTTACT CATTTTTAAT TCAGTCACTG CATTGCTGGC
  TACATTGTTT TGAGCCTAAA CCCTGTGTGC CTCATTGCCA CTCTGTTCCC AGCTTCTGAG
  AGACTTGGCA AGAGGATCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46714860	NES11012759	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32685679					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714860	NES11012759	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150534115 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605302	regulatory region 605302	1806 bp distal
Rr605303	regulatory region 605303	1425 bp proximal