rs32686092 SNP Detail

Summary

• ID
  rs32686092
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84440249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA AGTAAGACAT TCCCACTCGT
  M
  CCACCATGCT CCCCACATGA TGATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46177276	mCV23003774	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss145360600	ENSMUSSNP2887522	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		C
ss322745592	CHEV_8_86237519	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32686092					SNP	C	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84440249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	1290 bp proximal
Ddx39a	DEAD box helicase 39a	1557 bp upstream
Rr382392	regulatory region 382392	within coordinates
Rr401010	regulatory region 401010	1354 bp upstream
Rr666291	regulatory region 666291	907 bp proximal
Rr666292	regulatory region 666292	1067 bp proximal
Rr666293	regulatory region 666293	1939 bp proximal
Tssr78284	transcription start site region 78284	1571 bp upstream
Tssr78285	transcription start site region 78285	1607 bp upstream
Tssr78286	transcription start site region 78286	1619 bp upstream
Tssr78287	transcription start site region 78287	1685 bp upstream
Tssr78288	transcription start site region 78288	1884 bp upstream