rs32686549 SNP Detail

Summary

• ID
  rs32686549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164288266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTCTGTC TCTGGCTCAC CTCAAGCTCC ACCTGCCCAG
  CCAGTCTCCA CCATCTGGAG CTGTCTTATG CATTTCACCA TCTTCCCATC TAGAGCAGCC
  Y
  TGGGAAAACC GAGACAGAGA GGTATTCACA TTCCCCGCTT CCAGGTCTGC CAGCTTCTCC
  ACTTTGGTCA AGGCGCTTGT TCACCAGGGC TGTTCCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45179779	mCV25296154	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145978975	ENSMUSSNP810695	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32686549					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164288266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi945	CpG island 945	1621 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Gm70492	predicted gene, 70492	1951 bp upstream
Rr422217	regulatory region 422217	1962 bp distal
Rr422218	regulatory region 422218	1461 bp distal
Rr422219	regulatory region 422219	within coordinates
Rr422220	regulatory region 422220	1188 bp proximal
Rr422221	regulatory region 422221	1342 bp proximal
Tssr14748	transcription start site region 14748	1960 bp upstream
Tssr14749	transcription start site region 14749	142 bp downstream
Tssr14750	transcription start site region 14750	157 bp downstream