rs32687049 SNP Detail

Summary

• ID
  rs32687049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATCTGT GTTTTCTAGT
  GGTCTCAGGT GAGCCCTCGG TTGAGAACTG CTGGTCTAGA AGCAGGAGAT TGACCAGACT
  TGGCGCGCTG TGGCTGAGGA GCATGTAAGA GGGAGCATCG GTCTCCAGGA GCAATCACAA
  GCTGGGTGGT GGTACGCCAG AAGGCCTCCC CCAGTCATCT GTGGGTGATG TCCAGGAAGA
  Y
  AGCAGTGCTG AGGCGTGTTC CAGAAAGAAA TGGAGACCTG GTTAGTCACT GAACCCACAG
  GCCAGAAAGG AAAGTGCGAA GCGAGCAGTA TGAGGAGCTG TGCATACACA GAAAGGGCAT
  CGTGACCACT CCAACCTCCC CCACCCCCAA ATATTCAGAA GCAGCCTACA TATACATAGG
  CACTCTATAC ACACATGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47699070	NES10240085	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32687049					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699070	NES10240085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705841 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1905 bp downstream
Rr610560	regulatory region 610560			690 bp distal
Rr610561	regulatory region 610561			741 bp proximal
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant