rs32687385 SNP Detail

Summary

• ID
  rs32687385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108692913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTGTATG GGATTTTTCT GATGCTGGTG GTGTGTGTGT
  GCTTCAGTGT GGTGTCTGCC CGCCTGTTTT CTGGTACACA TGACTAGGCC ATAAGAGGAT
  R
  TTGGGTGTTT TCCTCTTCTG CTTGTTCTCC ACCTTATGAA ACAGCCTCAT TGAATTTGAG
  TTCACCATTT AGGCTAGAGG AGCCCTGTGT GTGTGCGCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45680567	mCV23912977	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32687385					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108692913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14564	CpG island 14564	1577 bp distal
Cpgi14565	CpG island 14565	576 bp distal
Rr376990	regulatory region 376990	649 bp downstream
Rr597225	regulatory region 597225	1612 bp distal
Rr597226	regulatory region 597226	1105 bp distal
Tssr38313	transcription start site region 38313	1099 bp downstream
Tssr38314	transcription start site region 38314	1011 bp downstream
Tssr38315	transcription start site region 38315	965 bp downstream
Tssr38316	transcription start site region 38316	909 bp downstream
Tssr42740	transcription start site region 42740	1462 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates