rs32687925 SNP Detail

Summary

• ID
  rs32687925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCAGC AGATTGTAAA
  GAAATACTTA GGGTCCACCC ACCTCTTCCC AAATTAGCAC GGTGCCTGTG CCATGGAAGT
  GGGAGTGCTT TACCTATCTC TTCAGGCTTA CAAAGCTCAC ATGGCCTCCA AGAAGGCAGG
  CAGGGTGTAG CTTTTCCTGA AGATGCCAGA CCACTTTAGT GAGCCCTGAG TAGCAATTGA
  Y
  AAAAGCATCA CTTTTTGGGC TAAACAGAGG TGATAGGCAA TAAGGACAGC AGCTAGCAGC
  CAGGTCATGT CCCAAATCTG TCGCTGCAGG GTTAGGGCTT CTTGGACCTC ATCAGGACCT
  CATTTATAGC CCCTCTGTAA AAGCATTATC TACAGGGCCA TCTCATGGGA TTGCTATGAG
  GTCAAAAAAA GTCGCATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47699078	NES10240190	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32687925					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699078	NES10240190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1255 bp downstream
Rr610560	regulatory region 610560			40 bp distal
Rr610561	regulatory region 610561			1391 bp proximal
Tssr46062	transcription start site region 46062			1388 bp downstream
Tssr50811	transcription start site region 50811			1376 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant