rs32687927 SNP Detail

Summary

• ID
  rs32687927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38704921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAGTG TGGCAATGTT
  CTGAGAGCCT GCCTCTCCTG TCAAGTACAG GTGCAGCTGA GCATACCATG TGACACTGTG
  ATCGCCTGTG GCCACTTGCA CTCGATAAGC CTTGCTCCCA AGGGCAAATT TGCAGTCTCA
  GTCTCCTGAA CATTTGCCCT GCCTCCCTGT GTGTAAGAGC TGGAGCTGAG TAAGATGCTT
  Y
  TGTGAGATGG ATGAGGTAGG CGGTACAAAG AAAGAACACA GACTGCGGTG CGAGTTGCTC
  CCACTGGAAT GCTGCCAGCA GATTGTAAAG AAATACTTAG GGTCCACCCA CCTCTTCCCA
  AATTAGCACG GTGCCTGTGC CATGGAAGTG GGAGTGCTTT ACCTATCTCT TCAGGCTTAC
  AAAGCTCACA TGGCCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47699080	NES10240189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32687927					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699080	NES10240189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38704921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			985 bp downstream
Rr610560	regulatory region 610560			within coordinates
Rr610561	regulatory region 610561			1661 bp proximal
Tssr46062	transcription start site region 46062			1118 bp downstream
Tssr50811	transcription start site region 50811			1106 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant