rs32688536 SNP Detail

Summary

• ID
  rs32688536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180036351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCAGA TTAGCTGTAG
  CGCAAATTGC TGGTTGGAGC TATCTTGCAG CTATCAATTA GCAAGACTGA AGAGGAATCA
  CAAGGAGTTC AGGGCAGAGG AAAACCAGAA TGAGATGGAG CTGGAGCACT GGTTAGAATA
  AATAAGAAGC CTAATCAAAA TATTTAACTT TTCAGCCATG TGAACTCACA AGTCTACTCA
  Y
  GGTTTGTCCG AGCAGAGGGG TCCTGACTAG TATGTTGGGA ATTACATGGT TAAAGTCCAA
  GGTCTGGTGC GGTATCCAAA CAGGAGGCGA GAGAGACAGT GTCCAGGCTC ATAACAACTC
  ACTGTCAAGA AATCTTAGTG TCCAATGGAA GCTACATTAA TCCGTCCCGG GGCAGCTCCT
  CCAGAGATAT AAAGGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46714996	NES10671298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32688536					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714996	NES10671298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180036351 () rs orientation: forward

Symbol	Name	Function Class
Gm57491	predicted gene, 57491	within coordinates
Rr372536	regulatory region 372536	1217 bp upstream
Rr424411	regulatory region 424411	1160 bp proximal
Rr424412	regulatory region 424412	1924 bp proximal