rs32688540 SNP Detail

Summary

• ID
  rs32688540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180037261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTAACAA GCGCAAAAGC
  ACTGAGCATA TTGTAAACCC TCATCCTTTA AAAATAGGTT GTTGTTGATT TAGGTATCTG
  AGTATTTCTA TAATTTTAAT CTGAATTCCT TTTTTAAAAT GTAGTGTGTG TGTGTGTGTG
  TGTGTGTGGT GACAGAGAGA GAGAGAGAGA GGCTATGAGT GAACATGTGA GGTGACCTGA
  R
  GTAGGTAAAA TGCATTCCCT GGATCTAACA TTTGATTAAA ATAGTTATAG ACTGTCTAAT
  GTGGATCCCT CTGGGAGAGC AGCACGCATT CTTAGCCACT GAGCCAACTC TCTAGTCCCT
  TAAACTGAGT TCTTAAAAAA GTATGTCAGG CTCTACTAAG TGGTAATATA ATTTTTTTTC
  TCTGAAAAAC ATGTATATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715005	NES10671301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32688540					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715005	NES10671301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180037261 () rs orientation: forward

Symbol	Name	Function Class
Gm57491	predicted gene, 57491	607 bp upstream
Rr372536	regulatory region 372536	307 bp upstream
Rr424411	regulatory region 424411	250 bp proximal
Rr424412	regulatory region 424412	1014 bp proximal