rs32688555 SNP Detail

Summary

• ID
  rs32688555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38704612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCTTAGC TTCCCAGAGA
  TGTCTGCAGG ACAGGACAGG GGTGGAAGGG CACATGTCAC CACCAGTCAG GGAACAGCAC
  ACTCAGCACC AGCTCCATTT CTTCTGGTCC AGGTTCAACA TTCAGCCCCA CTTAAATCAA
  GAGTTAATAT GCCTCCACAG AGCTGTCACA GTCCCTTGTG TTCTAGCTGG CCAGCAAACC
  K
  TGTATAGGAA GCAGGAAAAG TCCAAGAATG GCCAAACCCC AGTAGAGCAA GAAGCAGGTT
  CCTGTGTGAT TTGCAGAGCA TCCCTAACTC GCAGACTGAG CCCTTCATTT CTGAAGTGTG
  GCAATGTTCT GAGAGCCTGC CTCTCCTGTC AAGTACAGGT GCAGCTGAGC ATACCATGTG
  ACACTGTGAT CGCCTGTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47699088	NES10240184	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32688555					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699088	NES10240184	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38704612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			676 bp downstream
Rr610560	regulatory region 610560			44 bp proximal
Rr610561	regulatory region 610561			1970 bp proximal
Tssr46062	transcription start site region 46062			809 bp downstream
Tssr50811	transcription start site region 50811			797 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant