rs32688620 SNP Detail

Summary

• ID
  rs32688620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23631877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGTAGCT GCTTGCTGCT CCCAACCCAC CCCATCCTTG
  CACTACTAGC TCAGTTCAGA GTTAAAACCA GACTCTCAGA ATCCCACTCC TCAAACTAGC
  Y
  ACTGTCTCTG CCCCTCCACG TCCTCTTCAG ACCTGTGCCT CTCTGTTGAC ACCAGTCTGC
  TGGAGAGTAC ACAAAATCAG GGGCTTGGGT TTATTTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46178026	mCV23198218	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148849896	ENSMUSSNP6793242	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32688620					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23631877 () rs orientation: forward

Symbol	Name	Function Class
Ank1	ankyrin 1, erythroid	within coordinates
D8Rck1	DNA segment, Chr 8, Rockefeller University 1	291 bp distal
Gm15816	predicted gene 15816	within coordinates
Mir486	microRNA 486	694 bp upstream
Mir3107	microRNA 3107	712 bp downstream
Rr186384	regulatory region 186384	1476 bp distal
Rr186385	regulatory region 186385	1123 bp proximal
Tssr76619	transcription start site region 76619	1820 bp downstream
Tssr76620	transcription start site region 76620	1734 bp downstream
Tssr76621	transcription start site region 76621	1693 bp downstream
Tssr76622	transcription start site region 76622	1118 bp upstream
Tssr76623	transcription start site region 76623	1229 bp upstream
Tssr76624	transcription start site region 76624	1387 bp upstream