rs32689919 SNP Detail

Summary

• ID
  rs32689919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172330881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGTGTGGGT CGGGACCGAG CCTGACATTT ATCTGGTCTG
  GCTGGGGGGG ACGTCTCCTA ATGAACTTAA AAATAACTAA TTTATGGGGA AAGATCCTGC
  Y
  GGAAATATGC AGCTGGATAA ACCCAGAGTT AGAAAGGAGC AGCCATGTTG GAGGGTGGGG
  GAAGGGAGTG ACCCACCACA CAACCTCTGC CCAGACGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45180556	mCV22750478	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss120011629	PARCsnp_1.19893	PARC_SEQ	INBRED	f	SNP			C	T
ss120014570	PARCsnp_1.09939	PARC_SEQ	INBRED	f	SNP			C	T
ss146193914	ENSMUSSNP7156655	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32689919					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172330881 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	within coordinates
Rr29014	regulatory region 29014	919 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10217	transcription start site region 10217	1325 bp downstream
Tssr10218	transcription start site region 10218	722 bp downstream
Tssr10219	transcription start site region 10219	1949 bp upstream
Tssr15225	transcription start site region 15225	1697 bp upstream