rs32690169 SNP Detail

Summary

• ID
  rs32690169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180106385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAGGC TACCTGGAAC
  TTCTGATCTC CTGCCTCCGC CTTACAAGTG CTGGAATTAC AAAAATGTGC AACCATGATG
  ACTCGGGGCC GATTTGAATA GGATAAAAGA GAGCAATCCG TCTGTTACTC AATGTAGGAC
  ACACAAAGCT TATCTCTTTG CAGACTCTTT CGCTCGTGGG ATCAGATGTG TCATGAACAA
  Y
  TGCCGAGTTC TCTTGACTGC CAAGGGACAC CTGCCTGAGT CTTCTGGGTC CCCCACAGGT
  CTTTTAGATG TAAGGAATCC GTGATGGGTG CCAAGATACA TACCAAGCAC AGACACTTTG
  AGGATTCTGG CTCTATCACG CCCATTCTGC AGACCAGAAA GGGCTTCAGC AAACAAAATT
  TGGAGATGAG TTAGCTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46715740	NES10668292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32690169					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715740	NES10668292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180106385 () rs orientation: forward

Symbol	Name	Function Class
Gm70819	predicted gene, 70819	1548 bp downstream
Rr367068	regulatory region 367068	921 bp upstream
Rr424444	regulatory region 424444	842 bp distal
Rr424445	regulatory region 424445	517 bp proximal