rs32691971 SNP Detail

Summary

• ID
  rs32691971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCGCGGTGCA GCGGGAGGAG TGGGCGCACA GCAGCGGGAC GGTTAGGCAC CTCGAGCCGG
  CGGCCGTTGG GCTCCATTGA GCATGCGCCA GGGGCGGGCC AGCCGTTAGT AGGTCGGCTT
  CCGGGGACGG TGATGGGAAT GGCGGCTCTC GGAGGCCCCA TGTGTACCGT GGTGGGATTG
  AGGGACCGGG CGGATCCACA CTGCGTTTTC GGTCACGGCG AGAGGACTCA GGCTATCTGG
  GCAGACGTCC CGAGTCTGCA GTCACCGGCT TCCCGTCTTG TTCCGCCGCT CGCCCAGGAG
  M
  TTCTTCTCCA GACTCTGATG CGGAAGGCCA GTGTCGCGCC TCTTAGGAAC GTGGCCATTC
  ACTCGGCGTC GCTTTCCCGG TGTGAGGCCG GTTCAGCCCG TTGCCTCTGG TCTGCCTGGA
  CCTATAGTTG AAACTTTAGG TCTGTGACAG TCTGGGTTCA CTTGTTTCAT TTTCCTGGTT
  GAAGCAAGGC CTGACGTATT GGGGGTGGGG GGCCATACGC TCCGAGTTGC GCCTCAACTA
  GTTCCCGGAA CCTTTTGTGT GCCTAGATTC TTGAGACAGG ATCTCTTTAC ATAATCCTGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46177881	mCV23003779	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32691971					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			within coordinates
Ddx39a	DEAD box helicase 39a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1600 bp downstream
Rr401010	regulatory region 401010			432 bp downstream
Rr666291	regulatory region 666291			1159 bp distal
Rr666292	regulatory region 666292			149 bp distal
Rr666293	regulatory region 666293			within coordinates
Rr666294	regulatory region 666294			881 bp proximal
Tssr78284	transcription start site region 78284			503 bp downstream
Tssr78285	transcription start site region 78285			469 bp downstream
Tssr78286	transcription start site region 78286			419 bp downstream
Tssr78287	transcription start site region 78287			395 bp downstream
Tssr78288	transcription start site region 78288			183 bp downstream