rs32697699 SNP Detail

Summary

• ID
  rs32697699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC TCTCCTCATT TTGAGTACGG
  K
  ACAGAATCGG GTTTTTAAGC CTCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45181853	mCV27553553	ABI	CRAMUS_MOUSE	f	SNP	G	G	T			G		G
ss50916966	NES13479764	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G		G	G	T	T		G	T	T	G		T
ss148701024	ENSMUSSNP5587505	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					G
ss319649804	CHEV_1_19199676	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32697699					SNP	G	G	T	T	G	G	G	G	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916966	NES13479764	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	86 bp proximal
Rr408237	regulatory region 408237	1705 bp distal
Rr408238	regulatory region 408238	625 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1969 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	628 bp downstream
Tssr6031	transcription start site region 6031	601 bp downstream
Tssr6032	transcription start site region 6032	584 bp downstream
Tssr6033	transcription start site region 6033	562 bp downstream
Tssr6034	transcription start site region 6034	542 bp downstream
Tssr6035	transcription start site region 6035	506 bp downstream
Tssr6036	transcription start site region 6036	494 bp downstream
Tssr6037	transcription start site region 6037	469 bp downstream
Tssr6038	transcription start site region 6038	442 bp downstream
Tssr6039	transcription start site region 6039	418 bp downstream