rs32697831 SNP Detail

Summary

• ID
  rs32697831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186959507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGGACC TCACAGCCAA GAGCAGTTAG TGCTGTTGCT
  CATTGCTGTG GTGTGGCAGT GGTGGGACAG AGGAGGGGTT GGCTCACCTG CTCTGATGGC
  Y
  GATTTTGAAA GCCCCTCCCT CTTGTTTTCT ATGCCTCTGG TTAGTGATCT ACTTGTTACT
  CTTCCCATCC TGGAAGCATA ATGAGGCCAA ATCTTTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45181955	mCV23999399	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146461113	ENSMUSSNP4830380	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32697831					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186959507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			364 bp distal
Rr425580	regulatory region 425580			418 bp distal
Rr425581	regulatory region 425581			1235 bp proximal